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It's tang karma for having him in a 40gal.. at any given time when there in to small a tank they can decide there to big for the tank and start stressing out. Which leads to more problems.
If the Yellow Tang had been in the tank for 2 yrs with nothing new added for at least 8 months, how did the Velvet develop? From as far as I've read, this is long past the life cycle of the velvet dinoflagellate so how was the tank/fish infected?
Or cross contamination might have occurred from another source, all it takes is one dinospore in a droplet of water.
learned over the years you almost never get the whole story in fish disease threads.
Bigger tank is on its way but will take a few more months before migration. As for the stress, you made a good point but where the stress would come from at the moment? So I should just give him some time to recover?