I started to answer your questions one by one, but just felt the need to say something, so hopefully this answers some of your questions.
I'm not sure what "my methodology" is exactly. LOL
Science tells us, that in time, a balance will be reached if nutrients in are constant. Nutrients out will also become relatively constant in time. The question is, how high will the nutrients within the tank go before this balance is reached? The more surface area, or nooks and crannies, tiny spaces, we have for life to establish itself, and store nutrients, the higher that number can go.
We have the large number of species we do because they have evolved to live in different habitats. Sometimes vastly different habitats. Nutrient availability is one of the major contributing factors that determines what species lives where. As Lesse's link on bird poop clearly shows. This fact gets lost in our hobby. Most hobbyists view biodiversity in our tiny glass boxes as this wonderful thing that shows how healthy a system is. Just don't ask, "healthy to whom?". As nutrients climb, the system becomes more hospitable to organisms that prosper under high nutrient conditions, (algae, worms, sponges, pods.....) and less hospitable to organisms that prosper in low nutrient environments, (reef building stony corals and other delicate reef creatures). The opposite is also true. Sadly, much of the aquarium literature, that's geared more towards making the industry money, than it is to actually helping hobbyists care for their pets, created this misunderstanding. I don't blame the hobbyist. The industry did this, and now we have a large number of confused hobbyists.
People point to an abundance of organisms like algae and sponges as biomarkers to show the health of the system, while ignoring the reef building stony corals that are receding from the base up because they're attached to nutrient laden rocks, or the LPS corals that are missing tissue, or the clams with no or little growth bands.
The rapid growth of calcium carbonate depositing creatures like reef building corals, and clams is not evidence to suggest that the system is healthy for organisms like algae, sponges, and worms. Rapidly growing algae, sponges, and worms is not evidence that the system is healthy for calcium carbonate depositing creatures like reef building corals, and clams. These creatures prosper in conditions that are very different. One of the main environmental influences that determines who prospers and who doesn't is the amount of available nutrients.
We all keep different systems with different goals in mind. That's one of the cool things about our hobby. No two tanks are alike. I grow chaeto in my clownfish system, but if I put it in my 400 gallon system it will die. For hobbyists to achieve the goals they have in mind, they need to understand the environmental conditions of their system and what those conditions are likely to lead to.
Sorry for rambling.............
Gotta head off to work.
If I have time later, I'll try to be more specific in answering your questions.
Peace
EC
I think you're wrong about conditions suiting this or that organism. Nutrients vary on a reef, it's not at a constant level.
Most algaes are great at growing in low nutrient conditions, as long as all the other factors are good. Take away the herbivores and there will be algae growing